Structural and genetic basis of HIV-1 envelope V2 apex recognition by rhesus broadly neutralizing antibodies

恒河猴广谱中和抗体识别HIV-1包膜V2顶端的结构和遗传基础

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作者:Ryan S Roark #   ,Rumi Habib # ,Jason Gorman ,Hui Li,Andrew Jesse Connell,Mattia Bonsignori,Yicheng Guo,Michael P Hogarty,Adam S Olia,Kirsten J Sowers,Baoshan Zhang,Frederic Bibollet-Ruche,Tatsiana Bylund,Sean Callaghan,John W Carey,Gabriele Cerutti ,Darcy R Harris,Wanting He,Emily Lewis,Tracy Liu,Rosemarie D Mason,Yujie Qiao,Younghoon Park,Juliette M Rando,Ajay Singh,Jeremy J Wolff,Q Paula Lei,Mark K Louder,Raiees Andrabi ,Nicole A Doria-Rose,Kevin O Saunders   ,Michael S Seaman,Barton F Haynes ,Daniel W Kulp ,John R Mascola,Mario Roederer,Theodore C Pierson,Zizhang Sheng,Beatrice H Hahn,George M Shaw,Peter D Kwong ,Lawrence Shapiro

Abstract

Broadly neutralizing antibodies targeting the V2 apex of HIV-1 envelope are desired as vaccine design templates, but few have been described. Here, we report 11 lineages of V2 apex-neutralizing antibodies from simian-human immunodeficiency virus (SHIV)-infected rhesus macaques and determine cryo-EM structures for 9. A single V2 apex-neutralizing lineage accounted for cross-clade breadth in most macaques, and somatic hypermutation relative to breadth was generally low, exemplified by antibody V033-a.01 with <5% nucleotide mutation and 37% breadth (208-strain panel). Envelope complex structures revealed eight different antibody classes (one multi-donor) and the complete repertoire of all five possible recognition topologies, recapitulating canonical human modes of apex insertion and C-strand hydrogen bonding. Despite this diversity in recognition, all rhesus-V2 apex antibodies were derived from reading frame two of the DH3-15*01 gene. Collectively, these results define-in rhesus-the structural and genetic basis of HIV-1 V2 apex recognition and demonstrate unprecedented structural plasticity of a highly selected immunogenetic element.

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