Potent neutralization of SARS-CoV-2 variants of concern by an antibody with an uncommon genetic signature and structural mode of spike recognition

一种具有罕见基因特征和刺突蛋白识别结构模式的抗体,能够有效中和令人担忧的SARS-CoV-2变异株。

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作者:Kevin J Kramer,Nicole V Johnson,Andrea R Shiakolas,Naveenchandra Suryadevara,Sivakumar Periasamy,Nagarajan Raju,Jazmean K Williams,Daniel Wrapp,Seth J Zost,Lauren M Walker,Steven C Wall,Clinton M Holt,Ching-Lin Hsieh,Rachel E Sutton,Ariana Paulo,Rachel S Nargi,Edgar Davidson,Benjamin J Doranz,James E Crowe Jr,Alexander Bukreyev,Robert H Carnahan,Jason S McLellan,Ivelin S Georgiev  0

Abstract

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) lineages that are more transmissible and resistant to currently approved antibody therapies poses a considerable challenge to the clinical treatment of coronavirus disease (COVID-19). Therefore, the need for ongoing discovery efforts to identify broadly reactive monoclonal antibodies to SARS-CoV-2 is of utmost importance. Here, we report a panel of SARS-CoV-2 antibodies isolated using the linking B cell receptor to antigen specificity through sequencing (LIBRA-seq) technology from an individual who recovered from COVID-19. Of these antibodies, 54042-4 shows potent neutralization against authentic SARS-CoV-2 viruses, including variants of concern (VOCs). A cryoelectron microscopy (cryo-EM) structure of 54042-4 in complex with the SARS-CoV-2 spike reveals an epitope composed of residues that are highly conserved in currently circulating SARS-CoV-2 lineages. Further, 54042-4 possesses uncommon genetic and structural characteristics that distinguish it from other potently neutralizing SARS-CoV-2 antibodies. Together, these findings provide motivation for the development of 54042-4 as a lead candidate to counteract current and future SARS-CoV-2 VOCs.

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