Abstract
The genetically tractable unicellular red alga Cyanidioschyzon merolae has a remarkably simple genome (4,775 nucleus-encoded proteins) and cellular architecture. It contains only a single set of most membranous organelles, making it a valuable tool for elucidating the fundamental mechanisms of photosynthetic eukaryotes. However, as in other genetically tractable eukaryotic algae, previously developed systems for inducible gene expression rely on environmental stimuli such as heat shock or ammonium depletion, which impact cellular physiology and thus limit their usage. To overcome this issue, we developed IPTG- and estradiol-inducible gene expression systems in C. merolae in which the addition of these chemicals itself has no impact on cellular growth or the transcriptome. Additionally, we established IPTG- and estradiol-inducible protein knockdown systems and successfully degraded the endogenous chloroplast division protein DRP5B using the estradiol-inducible system. These systems facilitate functional genomic analyses in C. merolae, especially for understanding physiological mechanisms and their interactions in photosynthetic eukaryotes.