Lymphodepleting chemotherapy potentiates neoantigen-directed T cell therapy by enhancing antigen presentation

淋巴清除化疗通过增强抗原呈递来增强新抗原导向的T细胞疗法的疗效。

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作者:Shira Sagie,Tomer Babu,Chen Weller,Claire Tabachnik,Ido Livneh,Nele P Quast,Nofar Gumpert,Alina Shomuradova,Matthew I Raybould,Ronen Levy,Dmitry Malko,Adi Alfia,Talal Ben Lulu,Michal Alon,Franco Herrera,Mikhail Kutuzov,Mirie Zerbib,Polina Greenberg,Talya Wasserman-Bartov,Gil Benedek,Yishai Levin,Chani Stossel,Iris Kamer,Talia Golan,Roni Oren,Merav Shmueli,Osnat Bartok,Jair Bar,Jonathan Cohen,Omer Dushek,Charlotte M Deane,Yardena Samuels

Abstract

Adoptive cell therapy (ACT) targeting tumor-specific antigens holds promise for solid tumors, but limited neoantigen presentation remains a key barrier to efficacy. Here, we identify and characterize a T cell receptor (TCR), T104, for the KRAS.G12V mutation, a prevalent neoantigen in colorectal, lung, and pancreatic cancers. TCR-T104 selectively recognizes and kills KRAS.G12V-expressing tumor cells. Combining T cell therapy with lymphodepleting chemotherapy significantly enhances tumor cell killing, particularly by TCR-T cells, tumor-infiltrating lymphocytes (TILs), and T cell engager antibodies across multiple cancer types and target antigens. Mechanistically, chemotherapy upregulates immunoproteasome activity and human leukocyte antigen (HLA)-I surface expression. HLA-immunopeptidome analyses reveal that chemotherapy remodels the antigenic landscape across tumor cell lines and in vivo models, increasing peptide abundance and hydrophobicity while altering proteasomal cleavage preferences. These findings establish a synergistic role for chemotherapy in enhancing neoantigen presentation and T cell-mediated tumor recognition and suggest that fine-tuning these regimens could improve ACT efficacy, particularly in tumors with low-abundance neoantigens.

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