Cancer genes disfavoring T cell immunity identified via integrated systems approach

通过整合系统方法鉴定出不利于T细胞免疫的癌症基因

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作者:Rigel J Kishton,Shashank J Patel,Amy E Decker,Suman K Vodnala,Maggie Cam,Tori N Yamamoto,Yogin Patel,Madhusudhanan Sukumar,Zhiya Yu,Michelle Ji,Amanda N Henning,Devikala Gurusamy,Douglas C Palmer,Roxana A Stefanescu,Andrew T Girvin,Winifred Lo,Anna Pasetto,Parisa Malekzadeh,Drew C Deniger,Kris C Wood,Neville E Sanjana,Nicholas P Restifo

Abstract

Adoptive T cell therapies (ACT) have been curative for a limited number of cancer patients. The sensitization of cancer cells to T cell killing may expand the benefit of these therapies for more patients. To this end, we use a three-step approach to identify cancer genes that disfavor T cell immunity. First, we profile gene transcripts upregulated by cancer under selection pressure from T cell killing. Second, we identify potential tumor gene targets and pathways that disfavor T cell killing using signaling pathway activation libraries and genome-wide loss-of-function CRISPR-Cas9 screens. Finally, we implement pharmacological perturbation screens to validate these targets and identify BIRC2, ITGAV, DNPEP, BCL2, and ERRα as potential ACT-drug combination candidates. Here, we establish that BIRC2 limits antigen presentation and T cell recognition of tumor cells by suppressing IRF1 activity and provide evidence that BIRC2 inhibition in combination with ACT is an effective strategy to increase efficacy.

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